Phylogeny and Classification Student Learning Guide (HS)

1. Why do we need to classify living things?

Life on Earth has existed for about 3.8 billion years. Over that course of time, as many as 4 billion species may have existed. Currently, it’s estimated that Earth might have about 8.7 million species. About 1.9 million species have been identified and described.

To organize any large set of things, you need a classification system. “To classify” is to arrange things into groups or categories based on their shared qualities.  Taxonomy is the branch of biology concerned with classification. In this tutorial, you’ll learn how taxonomy is done. As you do, you’ll become a much better evolutionary thinker.

Let’s go.

2. Naming Species

During the mid-1700s, a Swedish botanist, zoologist, and physician named Carl Linnaeus developed the foundations of the system of taxonomy that we use today.

One of Linnaeus’ contributions was creating a system for naming species. In the Linnaean system, every species has a two-part name. For example, our species’ name is Homo sapiens. Not every species’ name means something, but ours does. It means “wise man” (Homo = man; sapiens = wise).

The first part of a species name identifies a genus. A genus is a group of closely related species. In our case, the other members of our genus — Homo — are extinct. The second part of the name is the specific epithet. For the human species, the specific epithet is sapiens.

Here are three more features of the Linnaean species-naming system:

1. Species names are in Latin and italicized.
2. The genus begins with a capital letter (as in “Homo“)
3. The specific epithet begins with a lowercase letter.

The plural of genus is genera. Here are a few more examples of species and genera.

• Dogs are in the species Canis lupus. Canis lupus includes both dogs and wolves.
• Coyotes (Canis latrans) are In the same genus as dogs and wolves (Canis) but are different enough to be put in their own species.
• Apples are Malus domestica. Other trees in the Malus genus produce crabapples, which are generally too sour to be eaten raw.
• If you live in the United States and have ants in your house, it’s very likely to be the Argentine ant, Linepithema humile. That species is native to South America but has been steadily expanding into North America.

Because the names in the Linnaean system have two parts, the system is called binomial nomenclature. You’ll also see these names referred to as binomials, scientific names, or Latin names.

Why does the Linnaean system use Latin names instead of common names (such as dog, sparrow, rose, redwood tree, and sword fern)? It’s because common names are imprecise. For example, if you live in North America, the robin in front of your house or apartment is a member of the species Turdus migratorius. But if you’re in Europe, what’s called a robin is the species Erithacus rubecula. The two robins are not closely related.

Common name	Robin	Robin
Region	North America	Europe, North Africa
Scientific name	Turdus migratorius	Erithacus rubecula

Here’s another example of the problem with common names. The animal that’s called an anteater on 3 different continents is not the same species.

Common name	Spiny Anteater	Cape Anteater	Giant Anteater
Region	Australia	Africa	South America
Scientific name	Tachyglossus aculeatus	Orycteropus afer	Myrmecophaga tridactyla

With binomial nomenclature, there’s no confusion.

3. Flashcards: Naming Species

4. Classifying species into groups above the species level

Now that we know how to name species, we can look at how they can be organized into groups.

The system that Linnaeus developed uses hierarchical categories. A hierarchy is a system with ranks or levels. For example in a system like an army, a private is the lowest rank. There are more privates than any other type of soldier. Above a private is a sergeant, and there are fewer sergeants than privates. The next rank up is lieutenant. This hierarchy continues up to general, of which there are very few.

As you’ll see below, species is the most specific classification category: there are more species than any other type of group. The other categories are increasingly general.

Here are the classification categories above the species level that were developed by Linnaeus:

• Related species are grouped into a common genus.
• Related genera (plural of genus) are grouped into families.
• Related families are grouped into orders.
• Related orders are grouped into classes
• Related classes are grouped into phyla (plural of phylum)
• Related phyla are grouped into kingdoms
• Related kingdoms are grouped into domains.

Take a minute to study this image which shows how the Red Fox, Vulpes vulpes, is classified. Note both the categories (species, genus, family, etc.) and the specific groups (Vulpes vulpes, Vulpes, Canidae, etc.).

The specific groups at each level are called taxa (plural for a taxon). How are the taxa different from the categories? Think of how you would respond if someone asked you where you lived. You could answer with many levels of specificity: your street, your neighborhood, your town, your state, your country. Those levels of specificity are equivalent to categories. Your specific answer (Main Street, Passaic, New Jersey, or the United States) is equivalent to a taxon.

The term taxon, by the way, should be easy to remember, because what we’re learning about is taxonomy: the science of classifying organisms. To show this classification system in action here’s some information about the taxa into which the red fox is classified. If you’re interested, you can follow the links to learn more about each taxon. All of these links open in a separate browser tab.

• Species: Vulpes vulpes. This is the largest species of fox. It ranges throughout the Northern hemisphere.
• Genus: Vulpes: 12 species of foxes.
• Family: Canidea: 34 species including those in the genus Vulpes, plus wolves and dogs, coyotes, jackals, and other types of wild dogs.
• Order: Carnivora: At least 279 species of the dog-like Canidae, plus cats, bears, hyenas, mongooses, bears, raccoons, pinnipeds (seals and sea lions), and others.
• Class: Mammals: About 6400 species of species that have hair and provide milk to their young. Includes Carnivora, plus rodents, whales, primates, bats, elephants, kangaroos, etc.
• Phylum: Chordates: About 65,000 species of mammals, birds, fish, reptiles, and amphibians, plus a few others.
• Kingdom: Animals: About 1.5 million species have been described. It’s estimated that there are over 7 million animal species. In addition to chordates, this taxon includes phyla such as mollusks (clams, octopi, snails); arthropods (insects, spiders, crabs); segmented worms (earthworms); echinoderms (sea stars, sea urchins), and cnidarians (jellyfish and anemones
• Domain: Eukaryotes: In addition to animals, this includes plants, fungi, and many kingdoms of single-celled organisms with complex, nucleated cells.

If you need to memorize the classification categories, you can use these mnemonics (memory techniques). The first letter of each word should remind you of Domain, Kingdom, Phylum, Class, Order, Family, Genus, and Species.

1. Daring kings play chess on fine gray satin.
2. Dear King Phillip came over for good soup.

5. Categories (and a few taxa) to know: Species, Genus, and Domain

Even if you’re not required to memorize all of the categories, everyone should know at least three. Based on what we’ve discussed above, you already know two: species and genus. The third one to know is the most general category: the domain.

Here are definitions for each of these:

• Species: For species that reproduce sexually, it’s a group of organisms that can interbreed to produce healthy, fertile offspring. Asexual species are classified by similarities in form, evolutionary history, or ecological role.
• Genus: A group of related species.
• Domain: This is the most inclusive classification category: there are only three. A domain is a group defined by similar cell types and other basic biological features, such as the type of ribosome.
  • Humans, along with all of the multicellular animals, plants, fungi, and many single-celled species belong to a domain known as Eucarya (also spelled Eukarya). the name reflects our large, complex eukaryotic cells. Organisms in this domain are often referred to as Eukaryotes.
  • The other two domains are Bacteria and Archaea. Organisms in this domain are unicellular, and their cells are simpler and smaller than eukaryotic cells.
  • Distinguishing between bacteria and archaea involves some pretty advanced biology (that’s not often a part of a high school course). If you want to learn more, try this page from Georgia Tech’s online textbook.

This diagram shows the three domains of life.

6. Flashcards: Classifying Species

7. Checking Understanding: Naming and Classifying  Species

Links

1. Continue to Clades and Phylogenetic Trees, Part 1 (the next tutorial in this module)
2. Classification and Phylogenetic Trees (HS Level) Main Menu